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  • Data  (13)
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  • 1
    Publication Date: 2023-06-08
    Description: Sediment sampling was performed at the center of the clam colony. Immediately after sample recovery onboard, the sediment core was sub-sampled and preserved for later analyses. Pyrite and carbonate content of the sediment was measured by X-ray refraction analysis as previously described (Ertefai et al., 2010).
    Keywords: 6K-957-CG; 6K-957-CY; Carbonates; Center for Marine Environmental Sciences; Clay minerals; Depth, bottom/max; DEPTH, sediment/rock; Depth, top/min; Event label; Illite; Kaolinite; MARUM; Mixed layer clay minerals; PUC; Push corer; Pyrite, FeS2; Sanriku Escarpment in the Japan Trench; Smectite; YK06-05; Yokosuka
    Type: Dataset
    Format: text/tab-separated-values, 54 data points
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  • 2
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    Unknown
    PANGAEA
    In:  Supplement to: Felden, Janine; Ruff, S Emil; Ertefai, Tobias F; Inagaki, Fumio; Hinrichs, Kai-Uwe; Wenzhöfer, Frank (2014): Anaerobic methanotrophic community of a 5346 m-deep vesicomyid clam colony in the Japan Trench. Geobiology, https://doi.org/10.1111/gbi.12078
    Publication Date: 2023-06-08
    Description: Vesicomyidae clams harbor sulfide-oxidizing endosymbionts and are typical members of cold seep communities associated with tectonic faults where active venting of fluids and gases takes place. We investigated the central biogeochemical processes that supported a vesicomyid clam colony as part of a locally restricted seep community in the Japan Trench at 5346 m water depth, one of the deepest seep settings studied to date. An integrated approach of biogeochemical and molecular ecological techniques was used combining in situ and ex situ measurements. During the cruise YK06-05 in 2006 with the RV Yokosuka to the Japan Trench, we investigated a clam colony inhabited by Abyssogena phaseoliformis (former known as Calyptogena phaseoliformis) and Isorropodon fossajaponicum (former known as Calyptogena fossajaponica). The targeted sampling and precise positioning of the in situ instruments were achieved with the manned research submersible Shinkai 6500 (JAMSTEC, Nankoku, Kochi, Japan). Sampling was first performed close to the rim of the JTC colony and then at the center. Immediately after sample recovery onboard, the sediment core was sub-sampled for ex situ rate measurements or preserved for later analyses. In sediment of the clam colony, low sulfate reduction (SR) rates (max. 128 nmol ml**-1 d**-1) were coupled to the anaerobic oxidation of methane (AOM). They were observed over a depth range of 15 cm, caused by active transport of sulfate due to bioturbation of the vesicomyid clams. A distinct separation between the seep and the surrounding seafloor was shown by steep horizontal geochemical gradients and pronounced microbial community shifts. The sediment below the clam colony was dominated by anaerobic methanotrophic archaea (ANME-2c) and sulfate-reducing Desulfobulbaceae (SEEP-SRB-3, SEEP-SRB-4). Aerobic methanotrophic bacteria were not detected in the sediment and the oxidation of sulfide seemed to be carried out chemolithoautotrophically by Sulfurovum species. Thus, major redox processes were mediated by distinct subgroups of seep-related microorganisms that might have been selected by this specific abyssal seep environment. Fluid flow and microbial activity was low but sufficient to support the clam community over decades and to build up high biomasses. Hence, the clams and their microbial communities adapted successfully to a low-energy regime and may represent widespread chemosynthetic communities in the Japan Trench.
    Keywords: Center for Marine Environmental Sciences; MARUM
    Type: Dataset
    Format: application/zip, 9 datasets
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  • 3
    Publication Date: 2023-06-08
    Keywords: 6K-955-CR; Center for Marine Environmental Sciences; DEPTH, sediment/rock; Headspace-Analysis (HS); MARUM; Methane, porewater; PUC; Push corer; Sanriku Escarpment in the Japan Trench; YK06-05; Yokosuka; δ13C, methane
    Type: Dataset
    Format: text/tab-separated-values, 6 data points
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  • 4
    Publication Date: 2023-06-08
    Keywords: 6K-957-CY; Center for Marine Environmental Sciences; DEPTH, sediment/rock; Headspace-Analysis (HS); MARUM; Methane, porewater; PUC; Push corer; Sanriku Escarpment in the Japan Trench; YK06-05; Yokosuka; δ13C, methane
    Type: Dataset
    Format: text/tab-separated-values, 6 data points
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  • 5
    Publication Date: 2023-12-08
    Keywords: 6K954CR/CG; 6K955CR; 6K957CY; 6K958CG; Ankerite; Apatite; Aragonite; Barite; Biotite; BS340G; BS362G; Calcite; Calcite/Dolomite ratio; Center for Marine Environmental Sciences; Chapopote; Chlorite; Chloritoid; Clinopyroxene; Cristobalite; Depth, bottom/max; DEPTH, sediment/rock; Depth, top/min; Dolomite; Epidote; Event label; GC; GeoB10610; GeoB10624-1; GeoB9903-1; GeoB9915-2; Glauconite; Gravity corer; High magnesium calcite; Iberia mound; Illite; Illite 10Å/Micas 5Å, ratio of integrated intensities; Japan Trench, seep site 1; Japan Trench, seep site 2; Kalifeldspar; Kalifeldspar/Plagioclase ratio; Kaolinite; Kaolinite (3.56-3.58Å)/Chlorite (3.50-3.54Å), ratio of integrated intensities; M67/2b; Magnetite; MARUM; Meteor (1986); Mixed layer clay minerals; Montmorillonite; Muscovite; Orthopyroxene; Plagioclase; Professor Logachev; PUC; Push corer; Pyrite, FeS2; Quartz; Quartz/Feldspar ratio; Quartz/Phyllosillicates ratio; Sample code/label; Siderite/Magnesite ratio; Silicon dioxide; SL-6; SL-9; Smectite; Sodium chloride; Spinel; Sum; Tridymite; TTR-15; Vivianite; X-ray diffraction (XRD); YK06-05; Yokosuka; Zeolite; Zircon
    Type: Dataset
    Format: text/tab-separated-values, 2339 data points
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  • 6
    Publication Date: 2024-02-02
    Description: The Dvurechenskii mud volcano (DMV), located in permanently anoxic waters at 2060 m depth (Sorokin Trough, Black Sea), was visited during the M72/2 cruise with the RV Meteor to investigate the methane and sulfide release from mud volcanoes into the Black Sea hydrosphere. We studied benthic fluxes of methane and sulfide, and the factors controlling transport, consumption and production of both compounds within the sediment. The pie shaped mud volcano showed temperature anomalies as well as solute and gas fluxes indicating high fluid flow at a small elevation north of the geographical center. The anaerobic oxidation of methane (AOM) coupled to sulfate reduction (SR) was excluded from this zone due to fluid-flow induced sulfate limitation and a fresh mud flow and consequently methane escaped into the water column with a rate of 0.46 mol/m**2/d. In the outer center of the mud volcano fluid flow and total methane flux were decreased, correlating with an increase in sulfate penetration into the sediment, and with higher SR and AOM rates. Here between 50-70% of the methane flux (0.07-0.1 mol/m**2/d) was consumed within the upper 10 cm of the sediment. Also at the edge of the mud volcano fluid flow and rates of methane and sulfate turnover were substantial. The overall amount of dissolved methane released from the mud volcano into the water column was significant with a discharge of 1.4x10**7 mol/yr. The DMV maintains also high areal rates of methane-fueled sulfide production of on average 0.05 mol/m**2/d. However, we concluded that sulfide and methane emission into the hydrosphere from deep water mud volcanoes does not significantly contribute to the sulfide and methane inventory of the Black Sea.
    Keywords: 11; 147; 150; 18; 9; Dvurechenskii; Dvurechenskii mud vulcano; HERMES; HERMIONE; Hotspot Ecosystem Research and Mans Impact On European Seas; Hotspot Ecosystem Research on the Margins of European Seas; M72/2; M72/2_270; M72/2_280; M72/2_282_PUC-67; M72/2_291; M72/2_309_MICP-1; M72/2_309_MICP-2; M72/2_309_MICP-3; M72/2_309_MICP-4; M72/2_309_MICP-5; M72/2_309_MICP-6; M72/2_309_MICP-7; M72/2_309_MICP-8; Meteor (1986); MICP; Microsensor profiler; Multicorer with television; PUC; Push corer; TVMUC
    Type: Dataset
    Format: application/zip, 12 datasets
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  • 7
    Publication Date: 2024-02-02
    Keywords: 151; 16; 301-U1301C; 311-U1326D; 6K957CY; Butane; Cascadia Margin Gas Hydrates; Center for Marine Environmental Sciences; Comment; Depth, bottom/max; DEPTH, sediment/rock; Depth, top/min; DRILL; Drilling/drill rig; DSDP/ODP/IODP sample designation; Dvurechenskii; Dvurechenskii mud vulcano; Ethane; Event label; Exp301; Exp311; Gas chromatography; Gas chromatography (filtered); GC_T; Gravity Corer/temperature probe; Headspace-Analysis (HS); Hexane; Integrated Ocean Drilling Program / International Ocean Discovery Program; IODP; Japan Trench, seep site 2; Joides Resolution; Juan de Fuca Hydrogeology; Juan de Fuca Ridge, North Pacific Ocean; M72/2; M72/2_310; M72/2_319_PUC-3; MARUM; Meteor (1986); Methane; Ocean Drilling Program; ODP; Pentane; Propane; PUC; Push corer; Sample code/label; YK06-05; Yokosuka
    Type: Dataset
    Format: text/tab-separated-values, 776 data points
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  • 8
    Publication Date: 2024-02-02
    Keywords: 16; 19; 6K955CR; 6K957CY; BS340G; BS344G; BS362G; Carbon, organic, total; Carbon, total; Center for Marine Environmental Sciences; Chapopote; DEPTH, sediment/rock; Dvurechenskii; Element analyser CS, LECO CS-200; Event label; GC; GC_T; GeoB10624-1; GeoB9903-1; GeoB9906-3; GeoB9915-2; Gravity corer; Gravity Corer/temperature probe; Iberia mound; Integrated Ocean Drilling Program / International Ocean Discovery Program; IODP; Japan Trench, seep site 2; M67/2b; M72/2; M72/2_310; M72/2_314; MARUM; Meteor (1986); Petroleum mound; Professor Logachev; PUC; Push corer; Sample code/label; SL-9; TTR-15; YK06-05; Yokosuka
    Type: Dataset
    Format: text/tab-separated-values, 321 data points
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  • 9
    Publication Date: 2024-02-02
    Keywords: 151; 16; 301-U1301C; 311-U1326D; 6K957CY; Cascadia Margin Gas Hydrates; Center for Marine Environmental Sciences; Comment; Depth, bottom/max; DEPTH, sediment/rock; Depth, top/min; DRILL; Drilling/drill rig; Dvurechenskii; Dvurechenskii mud vulcano; Event label; Exp301; Exp311; GC_T; Gravity Corer/temperature probe; Integrated Ocean Drilling Program / International Ocean Discovery Program; IODP; Japan Trench, seep site 2; Joides Resolution; Juan de Fuca Hydrogeology; Juan de Fuca Ridge, North Pacific Ocean; M72/2; M72/2_310; M72/2_319_PUC-3; MARUM; Mass spectrometer Finnigan Delta Plus XL; Meteor (1986); PUC; Push corer; Sample code/label; Standard deviation; YK06-05; Yokosuka; δ13C, methane; δ Deuterium, methane
    Type: Dataset
    Format: text/tab-separated-values, 733 data points
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  • 10
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    Unknown
    PANGAEA
    In:  Supplement to: Ertefai, Tobias F; Heuer, Verena B; Prieto-Mollar, Xavier; Vogt, Christoph; Sylva, Sean P; Seewald, Jeffrey S; Hinrichs, Kai-Uwe (2010): The biogeochemistry of sorbed methane in marine sediments. Geochimica et Cosmochimica Acta, 74, 6033-6048, https://doi.org/10.1016/j.gca.2010.08.006
    Publication Date: 2024-02-02
    Description: Sorption of volatile hydrocarbon gases (VHCs) to marine sediments is a recognized phenomenon that has been investigated in the context of petroleum exploration. However, little is known about the biogeochemistry of sorbed methane and higher VHCs in environments that are not influenced by thermogenic processes. This study evaluated two different extraction protocols for sorbed VHCs, used high pressure equipment to investigate the sorption of methane to pure clay mineral phases, and conducted a geochemical and mineralogical survey of sediment samples from different oceanographic settings and geochemical regimes that are not significantly influenced by thermogenic gas. Extraction of sediments under alkaline conditions yielded higher concentrations of sorbed methane than the established protocol for acidic extraction. Application of alkaline extraction in the environmental survey revealed the presence of substantial amounts of sorbed methane in 374 out of 411 samples (91%). Particularly high amounts, up to 2.1 mmol kg**-1 dry sediment, were recovered from methanogenic sediments. Carbon isotopic compositions of sorbed methane suggested substantial contributions from biogenic sources, both in sulfate-depleted and sulfate-reducing sediments. Carbon isotopic relationships between sorbed and dissolved methane indicate a coupling of the two pools. While our sorption experiments and extraction conditions point to an important role for clay minerals as sorbents, mineralogical analyses of marine sediments suggest that variations in mineral composition are not controlling variations in quantities of sorbed methane. We conclude that the distribution of sorbed methane in sediments is strongly influenced by in situ production.
    Keywords: 151; 16; 19; 201-1231E; 301-U1301C; 311-U1326D; 6K954CR/CG; 6K955CR; 6K957CY; 6K958CG; ARK-XXII/1b; Batumi seep area; BS340G; BS341G; BS344G; BS345GR; BS346GR; BS349G; BS350G; BS351DAPC; BS352G; BS356G; BS359DAPC; BS362G; BS363G; Cascadia Margin Gas Hydrates; Center for Marine Environmental Sciences; Chapopote; DAPC; Dive84; Dolgovskoy mound; DRILL; Drilling/drill rig; Dvurechenskii; Dvurechenskii mud vulcano; Dynamic autoclave piston corer; Exp301; Exp311; GC; GC_T; GeoB10606; GeoB10607; GeoB10610; GeoB10624-1; GeoB10625; GeoB12210-6; GeoB9903-1; GeoB9903-2; GeoB9906-3; GeoB9906-4; GeoB9908-1; GeoB9908-4; GeoB9909-1; GeoB9909-2; GeoB9909-3; GeoB9913-2; GeoB9913-5; GeoB9915-2; GeoB9916-1; Gravity corer; Gravity Corer/temperature probe; Iberia mound; Integrated Ocean Drilling Program / International Ocean Discovery Program; IODP; Japan Trench, seep site 1; Japan Trench, seep site 2; Joides Resolution; Juan de Fuca Hydrogeology; Juan de Fuca Ridge, North Pacific Ocean; Leg201; M67/2b; M72/2; M72/2_310; M72/2_314; M72/2_319_PUC-3; M74/2; M74/2_979-6; MARUM; Meteor (1986); Multicorer with television; Norwegian Sea; Oil Ridge; Pechori Mound; Petroleum mound; Polarstern; Professor Logachev; PS70; PS70/075-1; PUC; Push corer; Remote operated vehicle; ROV; SL-3; SL-6; SL-9; South Pacific Ocean; Television-Grab; TTR-15; TVG; TVMUC; TV-MUC-1; YK06-05; Yokosuka
    Type: Dataset
    Format: application/zip, 4 datasets
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