ALBERT

Description: Stable hydrogen isotope ratios (δ2H values) in structural hydroxyl groups of pedogenic clay minerals are inherited from the surrounding water at the time of their formation. Only non‐exchangeable H preserves the environmental forensic and paleoclimate information (δ2Hn value). To measure δ2Hn values in structural H of clay minerals and soil clay fractions, we adapted a steam equilibration method by accounting for high hygroscopicity. Our δ2Hn values for USGS57 biotite (−95.3 ± SD 0.9‰) and USGS58 muscovite (30.7 ± 1.4‰) differed slightly but significantly from the reported δ2H values (−91.5 ± 2.4‰ and −28.4 ± 1.6‰), because the minerals contained 1.1%–4.4% of exchangeable H. The low SD of replicate measurements (n = 3) confirmed a high precision. The clay separation method including destruction of Fe oxides, carbonates and soil organic matter, and dispersion did not significantly change the δ2Hn values of five different clay minerals. However, we were unable to remove all organic matter from the soil clay fractions resulting in an estimated bias of 1‰ in two samples and 15‰ in the carbon‐richest sample. Our results demonstrate that δ2Hn values of structural H of clay minerals and soil clay fractions can be reliably measured without interference from atmospheric water and the method used to separate the soil clay fraction. Highlights We tested steam equilibration to determine stable isotope ratios of structural H in clay. Gas‐tight capsule sealing in Ar atmosphere was necessary to avoid remoistening. Our steam equilibration method showed a high accuracy and precision. The clay separation method did not change stable isotope ratios of structural H in clay.

Description: Deutsche Forschungsgemeinschaft http://dx.doi.org/10.13039/501100001659

Description: Abstract

Description: The effects of climate and topography on soil physico-chemical and microbial parameters were studied along an extensive latitudinal climate gradient in the Coastal Cordillera of Chile (26° - 38°S). The study sites encompass arid (Pan de Azúcar), semiarid (Santa Gracia), mediterranean (La Campana) and humid (Nahuelbuta) climates and vegetation, ranging from arid desert, dominated by biological soil crusts (biocrusts), semiarid shrubland and mediterranean sclerophyllous forest, where biocrusts are present but do have a seasonal pattern to temperate-mixed forest, where biocrusts only occur as an early pioneering development stage after disturbance. All soils originate from granitic parent materials and show very strong differences in pedogenesis intensity and soil depth.Most of the investigated physical, chemical and microbiological soil properties showed distinct trends along the climate gradient. Further, abrupt changes between the arid northernmost study site and the other semi-arid to humid sites can be shown, which indicate non-linearity and thresholds along the climate gradient. Clay and total organic carbon contents (TOC) as well as Ah horizons and solum depths increased from arid to humid climates, whereas bulk density (BD), pH values and base saturation (BS) decreased. These properties demonstrate the accumulation of organic matter, clay formation and element leaching as key-pedogenic processes with increasing humidity. However, the soils in the northern arid climate do not follow this overall latitudinal trend, because texture and BD are largely controlled by aeolian input of dust and sea salts spray followed by the formation of secondary evaporate minerals. Total soil DNA concentrations and TOC increased from arid to humid sites, while areal coverage by biocrusts exhibited an opposite trend. Relative bacterial and archaeal abundances were lower in the arid site, but for the other sites the local variability exceeds the variability along the climate gradient. Differences in soil properties between topographic positions were most pronounced at the study sites with the mediterranean and humid climate, whereas microbial abundances were independent on topography across all study sites. In general, the regional climate is the strongest controlling factor for pedogenesis and microbial parameters in soils developed from the same parent material. Topographic position along individual slopes of limited length augmented this effect only under humid conditions, where water erosion likely relocated particles and elements downward. The change from alkaline to neutral soil pH between the arid and the semi-arid site coincided with qualitative differences in soil formation as well as microbial habitats. This also reflects non-linear relationships of pedogenic and microbial processes in soils depending on climate with a sharp threshold between arid and semi-arid conditions. Therefore, the soils on the transition between arid and semi-arid conditions are especially sensitive and may be well used as indicators of long and medium-term climate changes. Concluding, the unique latitudinal precipitation gradient in the Coastal Cordillera of Chile is predestined to investigate the effects of the main soil forming factor – climate – on pedogenic processes.The data presented here is part of the German-Chilean Priority Program “EarthShape” (Earth Surface Shaping by Biota), funded by the German Research Foundation (DFG). We provide the basic background data, which includes investigations into the influence of climate, vegetation and topography on pedogenesis and microbial abundances. The data are supplementary material to Bernhard et al. (2018).All tables are available as one Excel file, as individual tables in .csv format in a zipped archive and as PDF file. The samples are assigned with International Geo Sample Numbers (IGSN) and linked to a comprehensive sample description in the internet.The content of the five data tables is:Table S1: Soil profile field description for the EarthShape study sitesTable S2: Soil physico-chemical properties for the depth increment samples in the four study sitesTable S3: Soil physico-chemical properties for the horizon samples in the four study sitesTable S4: Relative microbial abundances in the four study sitesTable S5: Plant species and abundance (% cover) in the four study sites

Description: This data set contains four time series of particulate and dissolved soil nitrogen measurements from the main experiment plots of a large grassland biodiversity experiment (the Jena Experiment; see further details below). In the main experiment, 82 grassland plots of 20 x 20 m were established from a pool of 60 species belonging to four functional groups (grasses, legumes, tall and small herbs). In May 2002, varying numbers of plant species from this species pool were sown into the plots to create a gradient of plant species richness (1, 2, 4, 8, 16 and 60 species) and functional richness (1, 2, 3, 4 functional groups). Plots were maintained by bi-annual weeding and mowing. 1. Total nitrogen from solid phase: Stratified soil sampling was performed every two years since before sowing in April 2002 and was repeated in April 2004, 2006 and 2008 to a depth of 30 cm segmented to a depth resolution of 5 cm giving six depth subsamples per core. In 2002 five samples per plot were taken and analyzed independently. Averaged values per depth layer are reported. In later years, three samples per plot were taken, pooled in the field, and measured as a combined sample. Sampling locations were less than 30 cm apart from sampling locations in other years. All soil samples were passed through a sieve with a mesh size of 2 mm in 2002. In later years samples were further sieved to 1 mm. No additional mineral particles were removed by this procedure. Total nitrogen concentration was analyzed on ball-milled subsamples (time 4 min, frequency 30 s-1) by an elemental analyzer at 1150°C (Elementaranalysator vario Max CN; Elementar Analysensysteme GmbH, Hanau, Germany). 2. Total nitrogen from solid phase (high intensity sampling): In block 2 of the Jena Experiment, soil samples were taken to a depth of 1m (segmented to a depth resolution of 5 cm giving 20 depth subsamples per core) with three replicates per block ever 5 years starting before sowing in April 2002. Samples were processed as for the more frequent sampling but were always analyzed independently and never pooled. 3. Mineral nitrogen from KCl extractions: Five soil cores (diameter 0.01 m) were taken at a depth of 0 to 0.15 m (and between 2002 and 2004 also at a depth of 0.15 to 0.3 m) of the mineral soil from each of the experimental plots at various times over the years. In addition also plots of the management experiment, that altered mowing frequency and fertilized subplots (see further details below) were sampled in some later years. Samples of the soil cores per plot (subplots in case of the management experiment) were pooled during each sampling campaign. NO3‐N and NH4‐N concentrations were determined by extraction of soil samples with 1 M KCl solution and were measured in the soil extract with a Continuous Flow Analyzer (CFA, 2003–2005: Skalar, Breda, Netherlands; 2006–2007: AutoAnalyzer, Seal, Burgess Hill, United Kingdom). 4. Dissolved nitrogen in soil solution: Glass suction plates with a diameter of 12 cm, 1 cm thickness and a pore size of 1–1.6 µm (UMS GmbH, Munich, Germany) were installed in April 2002 in depths of 10, 20, 30 and 60 cm to collect soil solution. The sampling bottles were continuously evacuated to a negative pressure between 50 and 350 mbar, such that the suction pressure was about 50 mbar above the actual soil water tension. Thus, only the soil leachate was collected. Cumulative soil solution was sampled biweekly and analyzed for nitrate (NO3-), ammonium (NH4+) and total dissolved nitrogen concentrations with a continuous flow analyzer (CFA, Skalar, Breda, The Netherlands). Nitrate was analyzed photometrically after reduction to NO2- and reaction with sulfanilamide and naphthylethylenediamine-dihydrochloride to an azo-dye. Our NO3- concentrations contained an unknown contribution of NO2- that is expected to be small. Simultaneously to the NO3- analysis, NH4+ was determined photometrically as 5-aminosalicylate after a modified Berthelot reaction. The detection limits of NO3- and NH4+ were 0.02 and 0.03 mg N L-1, respectively. Total dissolved N in soil solution was analyzed by oxidation with K2S2O8 followed by reduction to NO2- as described above for NO3-. Dissolved organic N (DON) concentrations in soil solution were calculated as the difference between TDN and the sum of mineral N (NO3- + NH4+).

Description: This collection contains measurements of physical and chemical soil properties on the main experiment plots of a large grassland biodiversity experiment (the Jena Experiment; see further details below). In the main experiment, 82 grassland plots of 20 x 20 m were established from a pool of 60 species belonging to four functional groups (grasses, legumes, tall and small herbs). In May 2002, varying numbers of plant species from this species pool were sown into the plots to create a gradient of plant species richness (1, 2, 4, 8, 16 and 60 species) and functional richness (1, 2, 3, 4 functional groups). Plots were maintained in general by bi-annual weeding and mowing. Since 2010, plot size was reduced to 5 x 6 m and plots were weeded three times per year. The following series of datasets are contained in this collection: 1. Physical soil properties - Soil texture: Proportion of sand, silt and clay in the fine soil was measured in April 2002 before plot establishment at 27 locations distributed throughout the experimental site. Undisturbed soil cores were taken to 100 cm depth and separated in depth increments with a resolution of 10 to 20 cm. Grain size fractions according to DIN 19683-2 were then determined by a combined sieve and hydrometer analysis. Values for each plot were interpolated by ordinary kriging. - Bulk density: Bulk density was sampled down to 100 cm depth in 2002 and 30 cm depth in 2004, 2006 and 2008. Several undisturbed soil cores were taken per plot and separated in depth increments before the bulk material was sieved, dried and weighed. - Soil hydraulic properties: Field capacity and permanent wilting point at 10, 20 and 30 cm depth were derived from soil texture data of 2002 and bulk density 2006 by using pedotransfer functions. Applied was equation four and five of Zacharias and Wessolek (2007) to derive parameters of the water retention curve. Water contents at field capacity and permanent wilting point were obtained using the van Genuchte Eq (e.g. eq 1 in Zacharias and Wessolek), and calculating water contents at - 330 cm matric potential (field capacity, 1/3 of atmospheric pressure) and at -15000 cm. -Soil porosity: the fraction of total volume occupied by pores or voids measured at matric potential 0, already published on https://doi.pangaea.de/10.1594/PANGAEA.865254. 2. Chemical soil properties - Lime content: Percentage of CaCO3 in the soil was measured in April 2002 before plot establishment at 27 locations distributed throughout the experimental site. Undisturbed soil cores were taken to 100 cm depth and separated in depth increments with a resolution of 10 to 20 cm. The bulk material was sieved and CaCO3 content of the fine soil was determined as volumetric determination according to DIN 19684-5. - Soil organic matter: Percentage of soil organic matter was measured in April 2002 before plot establishment at 27 locations distributed throughout the experimental site. Undisturbed soil cores were taken to 100 cm depth and separated in depth increments with a resolution of 10 to 20 cm. The bulk material was sieved and organic content of the fine soil was determined using a loss-on-ignition method. - Soil pH value: soil pH value was determined 2002 and 2010 in water and 2002 also in calcium chloride. Five soil samples were taken per plot and bulk material was diluted in water and calcium chloride. PH values were then measured with an electrode.

Description: This data set contains two time series of measurements of dissolved phosphorus (organic, inorganic and total with a biweekly resolution) and dissolved inorganic phosphorus with a seasonal resolution. In addition, data on phosphorus from soil samples measured in 2007 and fractionated by different acid-extrations (Hedley fractions) are provided. All data measured at the main experiment plots of a large grassland biodiversity experiment (the Jena Experiment; see further details below). In the main experiment, 82 grassland plots of 20 x 20 m were established from a pool of 60 species belonging to four functional groups (grasses, legumes, tall and small herbs). In May 2002, varying numbers of plant species from this species pool were sown into the plots to create a gradient of plant species richness (1, 2, 4, 8, 16 and 60 species) and functional richness (1, 2, 3, 4 functional groups). Plots were maintained by bi-annual weeding and mowing. 1. Dissolved phosphorus in soil solution: Suction plates installed on the field site in 10, 20, 30 and 60 cm depth were used to sample soil pore water. Cumulatively extracted soil solution was collected every two weeks from October 2002 to May 2006. The biweekly samples from 2002, 2003 and 2004 were analyzed for dissolved organic phosphorus (DOP), dissolved inorganic phosphorus (PO4P) and dissolved total phosphorus (TDP) by Continuous Flow Analyzer (CFA SAN ++, SKALAR [Breda, The Netherlands]). 2. Seasonal values of dissolved inorganic phosphorus in soil solution were calculated as volume-weighted mean values of the biweekly measurements (spring = March to May, summer = June to August, fall = September to November, winter = December to February). 3. Phosphorus fractions in soil: Five independent soil samples per plot were taken in a depth of 0-15 cm using a soil corer with an inner diameter of 1 cm. The five samples per plot were combined to one composite sample per plot. A four-step sequential P fractionation (Hedley fractions) was applied and concentrations of P fractions in soil were measured photometrically (molybdenum blue-reactive P) with a Continuous Flow Analyzer (Bran&Luebbe, Germany).

Description: This collection contains measurements of element concentrations in plants on the main experiment plots of a large grassland biodiversity experiment (the Jena Experiment; see further details below). In the main experiment, 82 grassland plots of 20 x 20 m were established from a pool of 60 species belonging to four functional groups (grasses, legumes, tall and small herbs). In May 2002, varying numbers of plant species from this species pool were sown into the plots to create a gradient of plant species richness (1, 2, 4, 8, 16 and 60 species) and functional richness (1, 2, 3, 4 functional groups). Plots were maintained by bi-annual weeding and mowing. The following series of datasets are contained in this collection: 1. Carbon and nitrogen concentration in plants: C and N concentration in aboveground plant biomass was measured twice a year (once in 2002 and 2009) from 2002 to 2012. Plants were clipped at 3 cm above ground level in three or four rectangles of 20 x 50 cm size per plot. Target species were pooled per plot and harvest, dried at 70 °C for at least 48 h and cut up with an analysis mill (Kinematica, Littau, Schweiz). The cut material was milled in a ball-mill and carbon and nitrogen concentration was determined with an elemental analyzer. In 2010, phosphorous and potassium concentration was measured additionally. For this purpose, a subsample of the dried and cut material was milled and digested with HNO3 at 200 °C and at about 600-700 MPa using the microwave-assisted high pressure digestion unit (Ethos, Mikrowellen-Laborsysteme (MLS), Leutkirch, Germany). Phosphorus concentrations were determined in a Continuous Flow Analyzer, AA3-system (Bran and Lübbe, Hamburg-Norderstedt, Germany). For K measurement, atom absorption spectroscopy (AAS, Zeenit 700P, Analytik Jena, Jena, Germany) was used. 2. Carbon and nitrogen concentration in plants of the drought experiment: C and N concentration in aboveground plant biomass was measured once a year in 2008 and 2009 on the subplots of the drought experiment. Plants were harvested in rectangles of 20 x 50 cm size. Target species were dried at 70 °C for 48 h, grounded to powder and analyzed with an elemental analyzer. 3. Element analysis of phosphorous (P), calcium (Ca), potassium (K), sodium (Na) and magnesium (Mg) in plants: P, Ca, K, Na and Mg concentrations in aboveground plant biomass were measured twice a year (once in 2004) from 2003 to 2007. Plants were clipped at 3 cm above ground level in three or four rectangles of 20 x 50 cm size per plot. Target species were pooled per plot and harvest, dried at 70 °C for at least 48 h, shredded and milled. Each sample was digested with HNO3 at 200 °C and at about 600-700 MPa using the microwave-assisted high pressure digestion unit (Mars 5 Express, CEM, Lintfort, Germany). Phosphorus concentrations were determined in a Continuous Flow Analyzer, AA3-system (Bran and Lübbe, Hamburg-Norderstedt, Germany). For Ca, K, Na and Mg measurement, atom absorption spectroscopy (AAS, AS240FS Fast Sequential AAS, Varian, Palo Alto, USA) was used.

Description: This data set contains measurements of P, Ca, K, Na and Mg concentrations in aboveground plant biomass. Data presented here is from the Main Experiment plots of a large grassland biodiversity experiment (the Jena Experiment; see further details below). In the main experiment, 82 grassland plots of 20 x 20 m were established from a pool of 60 species belonging to four functional groups (grasses, legumes, tall and small herbs). In May 2002, varying numbers of plant species from this species pool were sown into the plots to create a gradient of plant species richness (1, 2, 4, 8, 16 and 60 species) and functional richness (1, 2, 3, 4 functional groups). Plots were maintained in general by bi-annual weeding and mowing. Since 2010, plot size was reduced to 5 x 6 m and plots were weeded three times per year. Aboveground plant biomass was harvested twice in May and August at estimated peak standing biomass before mowing. Plants were clipped at 3 cm above ground level in four rectangles of 20 x 50 cm size per plot. All material was sorted to species, weeds and rest (dead). Samples were dried at 70 °C for at least 48 h and weeds and rest were thrown away. All other material was pooled per plot and harvest, shredded and milled for chemical analyses. Each sample was digested with HNO3 at 200 °C and at about 600-700 MPa using the microwave-assisted high pressure digestion unit (Mars 5 Express, CEM, Lintfort, Germany). Phosphorus concentrations were determined in a Continuous Flow Analyzer, AA3-system (Bran and Lübbe, Hamburg-Norderstedt, Germany). For Ca, K, Na and Mg measurement, atom absorption spectroscopy (AAS, AS240FS Fast Sequential AAS, Varian, Palo Alto, USA) was used.

Description: This data set contains measurements of P, Ca, K, Na and Mg concentrations in aboveground plant biomass. Data presented here is from the Main Experiment plots of a large grassland biodiversity experiment (the Jena Experiment; see further details below). In the main experiment, 82 grassland plots of 20 x 20 m were established from a pool of 60 species belonging to four functional groups (grasses, legumes, tall and small herbs). In May 2002, varying numbers of plant species from this species pool were sown into the plots to create a gradient of plant species richness (1, 2, 4, 8, 16 and 60 species) and functional richness (1, 2, 3, 4 functional groups). Plots were maintained in general by bi-annual weeding and mowing. Since 2010, plot size was reduced to 5 x 6 m and plots were weeded three times per year. Aboveground plant biomass was harvested once in May at estimated peak standing biomass before mowing. Plants were clipped at 3 cm above ground level in four rectangles of 20 x 50 cm size per plot. All material was sorted to species, weeds and rest (dead). Samples were dried at 70 °C for at least 48 h and weeds and rest were thrown away. All other material was pooled per plot and harvest, shredded and milled for chemical analyses. Each sample was digested with HNO3 at 200 °C and at about 600-700 MPa using the microwave-assisted high pressure digestion unit (Mars 5 Express, CEM, Lintfort, Germany). Phosphorus concentrations were determined in a Continuous Flow Analyzer, AA3-system (Bran and Lübbe, Hamburg-Norderstedt, Germany). For Ca, K, Na and Mg measurement, atom absorption spectroscopy (AAS, AS240FS Fast Sequential AAS, Varian, Palo Alto, USA) was used.

Description: This data set contains measurements of P, Ca, K, Na and Mg concentrations in aboveground plant biomass. Data presented here is from the Main Experiment plots of a large grassland biodiversity experiment (the Jena Experiment; see further details below). In the main experiment, 82 grassland plots of 20 x 20 m were established from a pool of 60 species belonging to four functional groups (grasses, legumes, tall and small herbs). In May 2002, varying numbers of plant species from this species pool were sown into the plots to create a gradient of plant species richness (1, 2, 4, 8, 16 and 60 species) and functional richness (1, 2, 3, 4 functional groups). Plots were maintained in general by bi-annual weeding and mowing. Since 2010, plot size was reduced to 5 x 6 m and plots were weeded three times per year. Aboveground plant biomass was harvested twice in May and August at estimated peak standing biomass before mowing. Plants were clipped at 3 cm above ground level in four (three in May) rectangles of 20 x 50 cm size per plot. All material was sorted to species, weeds and rest (dead). Samples were dried at 70 °C for at least 48 h and weeds and rest were thrown away. All other material was pooled per plot and harvest, shredded and milled for chemical analyses. Each sample was digested with HNO3 at 200 °C and at about 600-700 MPa using the microwave-assisted high pressure digestion unit (Mars 5 Express, CEM, Lintfort, Germany). Phosphorus concentrations were determined in a Continuous Flow Analyzer, AA3-system (Bran and Lübbe, Hamburg-Norderstedt, Germany). For Ca, K, Na and Mg measurement, atom absorption spectroscopy (AAS, AS240FS Fast Sequential AAS, Varian, Palo Alto, USA) was used.

Description: This data set contains measurements of dissolved nitrogen (total dissolved nitrogen: TDN, dissolved organic nitrogen: DON, dissolved ammonium: NH4+, and dissolved nitrate: NO3-) in samples of soil water collected from the main experiment plots of a large grassland biodiversity experiment (the Jena Experiment; see further details below). In the main experiment, 82 grassland plots of 20 x 20 m were established from a pool of 60 species belonging to four functional groups (grasses, legumes, tall and small herbs). In May 2002, varying numbers of plant species from this species pool were sown into the plots to create a gradient of plant species richness (1, 2, 4, 8, 16 and 60 species) and functional richness (1, 2, 3, 4 functional groups). Plots were maintained by bi-annual weeding and mowing. In April 2002 glass suction plates with a diameter of 12 cm, 1 cm thickness and a pore size of 1–1.6 µm (UMS GmbH, Munich, Germany) were installed in depths of 10, 20, 30 and 60 cm to collect soil solution. The sampling bottles were continuously evacuated to a negative pressure between 50 and 350 mbar, such that the suction pressure was about 50 mbar above the actual soil water tension. Thus, only the soil leachate was collected. Cumulative soil solution was sampled biweekly and analyzed for nitrate (NO3-) and ammonium (NH4+) concentrations with a continuous flow analyzer (CFA, Skalar, Breda, The Netherlands). Nitrate was analyzed photometrically after reduction to NO2- and reaction with sulfanilamide and naphthylethylenediamine-dihydrochloride to an azo-dye. Our NO3- concentrations contained an unknown contribution of NO2- that is expected to be small. Simultaneously to the NO3- analysis, NH4+ was determined photometrically as 5-aminosalicylate after a modified Berthelot reaction. The detection limits of NO3- and NH4+ were 0.02 and 0.03 mg N L-1, respectively. Total dissolved N in soil solution was analyzed by oxidation with K2S2O8 followed by reduction to NO2- as described above for NO3-. Dissolved organic N (DON) concentrations in soil solution were calculated as the difference between TDN and the sum of mineral N (NO3- + NH4+). In 5% of the samples, TDN was equal to or smaller than mineral N. In these cases, DON was assumed to be zero.