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  • 1
    Publication Date: 2014-05-03
    Description: To extend our understanding of the genetic basis of human immune function and dysfunction, we performed an expression quantitative trait locus (eQTL) study of purified CD4(+) T cells and monocytes, representing adaptive and innate immunity, in a multi-ethnic cohort of 461 healthy individuals. Context-specific cis- and trans-eQTLs were identified, and cross-population mapping allowed, in some cases, putative functional assignment of candidate causal regulatory variants for disease-associated loci. We note an over-representation of T cell-specific eQTLs among susceptibility alleles for autoimmune diseases and of monocyte-specific eQTLs among Alzheimer's and Parkinson's disease variants. This polarization implicates specific immune cell types in these diseases and points to the need to identify the cell-autonomous effects of disease susceptibility variants.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Raj, Towfique -- Rothamel, Katie -- Mostafavi, Sara -- Ye, Chun -- Lee, Mark N -- Replogle, Joseph M -- Feng, Ting -- Lee, Michelle -- Asinovski, Natasha -- Frohlich, Irene -- Imboywa, Selina -- Von Korff, Alina -- Okada, Yukinori -- Patsopoulos, Nikolaos A -- Davis, Scott -- McCabe, Cristin -- Paik, Hyun-il -- Srivastava, Gyan P -- Raychaudhuri, Soumya -- Hafler, David A -- Koller, Daphne -- Regev, Aviv -- Hacohen, Nir -- Mathis, Diane -- Benoist, Christophe -- Stranger, Barbara E -- De Jager, Philip L -- F32 AG043267/AG/NIA NIH HHS/ -- RC2 GM093080/GM/NIGMS NIH HHS/ -- Howard Hughes Medical Institute/ -- New York, N.Y. -- Science. 2014 May 2;344(6183):519-23. doi: 10.1126/science.1249547.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Program in Translational NeuroPsychiatric Genomics, Institute for the Neurosciences, Departments of Neurology and Psychiatry, Brigham and Women's Hospital, Boston, MA 02115, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24786080" target="_blank"〉PubMed〈/a〉
    Keywords: Adaptive Immunity/genetics ; Alleles ; Alzheimer Disease/ethnology/genetics ; Autoimmune Diseases/ethnology/*genetics ; Autoimmunity/*genetics ; CD4-Positive T-Lymphocytes/*immunology ; Ethnic Groups/genetics ; Genetic Predisposition to Disease/ethnology/*genetics ; Genome-Wide Association Study ; Humans ; Immunity, Innate/genetics ; Monocytes/*immunology ; Multiple Sclerosis/ethnology/genetics ; Neurodegenerative Diseases/ethnology/*genetics ; Parkinson Disease/ethnology/genetics ; Polymorphism, Single Nucleotide ; Quantitative Trait Loci ; Rheumatic Fever/ethnology/genetics ; Transcriptome
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 2
    Publication Date: 2015-08-15
    Description: T regulatory cells that express the transcription factor Foxp3 (Foxp3(+) T(regs)) promote tissue homeostasis in several settings. We now report that symbiotic members of the human gut microbiota induce a distinct T(reg) population in the mouse colon, which constrains immuno-inflammatory responses. This induction-which we find to map to a broad, but specific, array of individual bacterial species-requires the transcription factor Rorgamma, paradoxically, in that Rorgamma is thought to antagonize FoxP3 and to promote T helper 17 (T(H)17) cell differentiation. Rorgamma's transcriptional footprint differs in colonic T(regs) and T(H)17 cells and controls important effector molecules. Rorgamma, and the T(regs) that express it, contribute substantially to regulating colonic T(H)1/T(H)17 inflammation. Thus, the marked context-specificity of Rorgamma results in very different outcomes even in closely related cell types.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4700932/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4700932/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Sefik, Esen -- Geva-Zatorsky, Naama -- Oh, Sungwhan -- Konnikova, Liza -- Zemmour, David -- McGuire, Abigail Manson -- Burzyn, Dalia -- Ortiz-Lopez, Adriana -- Lobera, Mercedes -- Yang, Jianfei -- Ghosh, Shomir -- Earl, Ashlee -- Snapper, Scott B -- Jupp, Ray -- Kasper, Dennis -- Mathis, Diane -- Benoist, Christophe -- R01 AI110630/AI/NIAID NIH HHS/ -- R01-AI51530/AI/NIAID NIH HHS/ -- R37 AI051530/AI/NIAID NIH HHS/ -- R56 AI110630/AI/NIAID NIH HHS/ -- R56-AI110630/AI/NIAID NIH HHS/ -- New York, N.Y. -- Science. 2015 Aug 28;349(6251):993-7. doi: 10.1126/science.aaa9420. Epub 2015 Aug 13.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Division of Immunology, Department of Microbiology and Immunobiology, Harvard Medical School, Boston 02115, MA, USA. ; Division of Gastroenterology and Hepatology, Brigham and Women's Hospital, Boston, MA 02115, USA, and Department of Medicine, Harvard Medical School, Boston, MA 02115, USA. ; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA. ; Tempero Pharmaceuticals, a GSK Company, Cambridge, MA 02115, USA. ; UCB Pharma, Slough, Berkshire, UK. ; Division of Immunology, Department of Microbiology and Immunobiology, Harvard Medical School, Boston 02115, MA, USA. Evergrande Center for Immunologic Diseases, Harvard Medical School and Brigham and Women's Hospital, Boston, MA 02115, USA. cbdm@hms.harvard.edu.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26272906" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Bacteria/immunology ; Bacteroidetes/immunology/physiology ; Colitis, Ulcerative/immunology ; Colon/*immunology/microbiology ; Forkhead Transcription Factors/analysis/metabolism ; Homeostasis ; Humans ; *Immunity, Mucosal ; Intestinal Mucosa/*immunology/microbiology ; Mice, Inbred C57BL ; Microbiota/*immunology/physiology ; Nuclear Receptor Subfamily 1, Group F, Member 3/genetics/*metabolism ; Symbiosis ; T-Lymphocyte Subsets/immunology ; T-Lymphocytes, Regulatory/*immunology ; Th17 Cells/immunology ; Transcription, Genetic ; Transcriptome
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 3
    Publication Date: 2015-03-21
    Description: Aire is an important regulator of immunological tolerance, operating in a minute subset of thymic stromal cells to induce transcripts encoding peptides that guide T cell selection. Expression of Aire during a perinatal age window is necessary and sufficient to prevent the multiorgan autoimmunity characteristic of Aire-deficient mice. We report that Aire promotes the perinatal generation of a distinct compartment of Foxp3(+)CD4(+) regulatory T (Treg) cells, which stably persists in adult mice. This population has a role in maintaining self-tolerance, a transcriptome and an activation profile distinguishable from those of Tregs produced in adults. Underlying the distinct Treg populations are age-dependent, Aire-independent differences in the processing and presentation of thymic stromal-cell peptides, resulting in different T cell receptor repertoires. Our findings expand the notion of a developmentally layered immune system.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4710357/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4710357/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Yang, Siyoung -- Fujikado, Noriyuki -- Kolodin, Dmitriy -- Benoist, Christophe -- Mathis, Diane -- R01 DK060027/DK/NIDDK NIH HHS/ -- New York, N.Y. -- Science. 2015 May 1;348(6234):589-94. doi: 10.1126/science.aaa7017. Epub 2015 Mar 19.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Division of Immunology, Department of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115, USA. Aging Intervention Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 125 Gwahak-ro, Yuseong-gu, Daejeon, 305-806, South Korea. ; Division of Immunology, Department of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115, USA. ; Division of Immunology, Department of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115, USA. Evergrande Center for Immunologic Diseases, Harvard Medical School and Brigham and Women's Hospital, Boston MA 02115, USA. cbdm@hms.harvard.edu.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25791085" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Antigens, CD4/analysis ; Autoimmunity ; Forkhead Transcription Factors/analysis ; Mice ; Mice, Knockout ; Receptors, Antigen, T-Cell/immunology ; Self Tolerance/*genetics ; T-Lymphocytes, Regulatory/*immunology ; Transcription Factors/genetics/*physiology ; Transcriptome
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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