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  • 1
    Publication Date: 2009-07-18
    Description: Analysis of Neandertal DNA holds great potential for investigating the population history of this group of hominins, but progress has been limited due to the rarity of samples and damaged state of the DNA. We present a method of targeted ancient DNA sequence retrieval that greatly reduces sample destruction and sequencing demands and use this method to reconstruct the complete mitochondrial DNA (mtDNA) genomes of five Neandertals from across their geographic range. We find that mtDNA genetic diversity in Neandertals that lived 38,000 to 70,000 years ago was approximately one-third of that in contemporary modern humans. Together with analyses of mtDNA protein evolution, these data suggest that the long-term effective population size of Neandertals was smaller than that of modern humans and extant great apes.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Briggs, Adrian W -- Good, Jeffrey M -- Green, Richard E -- Krause, Johannes -- Maricic, Tomislav -- Stenzel, Udo -- Lalueza-Fox, Carles -- Rudan, Pavao -- Brajkovic, Dejana -- Kucan, Zeljko -- Gusic, Ivan -- Schmitz, Ralf -- Doronichev, Vladimir B -- Golovanova, Liubov V -- de la Rasilla, Marco -- Fortea, Javier -- Rosas, Antonio -- Paabo, Svante -- New York, N.Y. -- Science. 2009 Jul 17;325(5938):318-21. doi: 10.1126/science.1174462.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Max-Planck Institute for Evolutionary Anthropology, D-04103 Leipzig, Germany. briggs@eva.mpg.de〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19608918" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Bayes Theorem ; DNA Primers ; DNA, Mitochondrial/analysis/*genetics/isolation & purification ; Evolution, Molecular ; Female ; *Fossils ; Gene Library ; Genetic Variation ; Genome, Human ; *Genome, Mitochondrial ; Geography ; Hominidae/*genetics ; Humans ; Male ; Molecular Sequence Data ; Phylogeny ; Population Density ; *Sequence Analysis, DNA
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 2
    Publication Date: 2010-12-24
    Description: Using DNA extracted from a finger bone found in Denisova Cave in southern Siberia, we have sequenced the genome of an archaic hominin to about 1.9-fold coverage. This individual is from a group that shares a common origin with Neanderthals. This population was not involved in the putative gene flow from Neanderthals into Eurasians; however, the data suggest that it contributed 4-6% of its genetic material to the genomes of present-day Melanesians. We designate this hominin population 'Denisovans' and suggest that it may have been widespread in Asia during the Late Pleistocene epoch. A tooth found in Denisova Cave carries a mitochondrial genome highly similar to that of the finger bone. This tooth shares no derived morphological features with Neanderthals or modern humans, further indicating that Denisovans have an evolutionary history distinct from Neanderthals and modern humans.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4306417/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4306417/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Reich, David -- Green, Richard E -- Kircher, Martin -- Krause, Johannes -- Patterson, Nick -- Durand, Eric Y -- Viola, Bence -- Briggs, Adrian W -- Stenzel, Udo -- Johnson, Philip L F -- Maricic, Tomislav -- Good, Jeffrey M -- Marques-Bonet, Tomas -- Alkan, Can -- Fu, Qiaomei -- Mallick, Swapan -- Li, Heng -- Meyer, Matthias -- Eichler, Evan E -- Stoneking, Mark -- Richards, Michael -- Talamo, Sahra -- Shunkov, Michael V -- Derevianko, Anatoli P -- Hublin, Jean-Jacques -- Kelso, Janet -- Slatkin, Montgomery -- Paabo, Svante -- R01 GM040282/GM/NIGMS NIH HHS/ -- R01-GM40282/GM/NIGMS NIH HHS/ -- England -- Nature. 2010 Dec 23;468(7327):1053-60. doi: 10.1038/nature09710.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Genetics, Harvard Medical School, Boston, Massachusetts 02115, USA. reich@genetics.med.harvard.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21179161" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Asia ; DNA, Mitochondrial/genetics ; Europe ; Finger Phalanges/chemistry ; *Fossils ; *Gene Flow ; Genome/*genetics ; Hominidae/*classification/*genetics ; Humans ; Melanesia ; Molecular Sequence Data ; Phylogeny ; Siberia ; Tooth/anatomy & histology/chemistry
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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