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  • 1
    Publication Date: 2015-04-20
    Description: Mucormycosis usually presents as a progressive infection with significant angio-invasion. Mucormycosis due to Mucor irregularis (formerly Rhizomucor variabilis var. variabilis), however, is exceptional in causing chronic cutaneous infection in immunocompetent humans, ultimately leading to severe morbidity if left untreated. More than 90 % of the cases known to date were reported from Asia, mainly from China. The nearest neighbour of M. irregularis is the saprobic species M. hiemalis. The aim of this study was to evaluate the taxonomic position, epidemiology, and intra- and inter-species diversity of M. irregularis based on 21 strains (clinical n = 17) by multilocus analysis using ITS, LSU, RPB1 and RPB2 genes, compared to results of cluster analysis with amplified fragment length polymorphism (AFLP) data. By combining MLST and AFLP analyses, M. irregularis was found to be monophyletic with high bootstrap support, and consisted of five subgroups, which were not concordant in all partitions. It was thus confirmed that M. irregularis is a single species at 96.1–100 % ITS similarity and low recombination rates between populations. Some geographic structuring was noted with some localised populations, which may be explained by limited air-dispersal. The natural habitat of the species is likely to be in soil and decomposing plant material.
    Keywords: Biodiversity ; chronic cutaneous infection ; epidemiology ; Mucor hiemalis ; Mucor irregularis ; Mucormycosis ; taxonomy
    Repository Name: National Museum of Natural History, Netherlands
    Type: Article / Letter to the editor
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  • 2
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    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi (1878-9080) vol.38 (2017) p.1
    Publication Date: 2016-08-25
    Description: Phialophora as defined by its type species P. verrucosa is a genus of Chaetothyriales, and a member of the group known as ‘black yeasts and relatives’. Phialophora verrucosa has been reported from mutilating human infections such as chromoblastomycosis, disseminated phaeohyphomycosis and mycetoma, while morphologically similar fungi are rather commonly isolated from the environment. Phenotypes are insufficient for correct species identification, and molecular data have revealed significant genetic variation within the complex of species currently identified as P. verrucosa or P. americana. Multilocus analysis of 118 strains revealed the existence of five reproductively isolated species apparently having different infectious potentials. Strains of the sexual morph Capronia semiimmersa cluster within P. americana. The newly defined taxa differ markedly in their predilection for the human host.
    Keywords: Chaetothyriales ; chromoblastomycosis ; phaeohyphomycosis ; Phialophora ; phylogeny ; taxonomy
    Repository Name: National Museum of Natural History, Netherlands
    Type: Article / Letter to the editor
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  • 3
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    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi vol. 38, pp. 1-19
    Publication Date: 2024-01-12
    Description: Phialophora as defined by its type species P. verrucosa is a genus of Chaetothyriales, and a member of the group known as \xe2\x80\x98black yeasts and relatives\xe2\x80\x99. Phialophora verrucosa has been reported from mutilating human infections such as chromoblastomycosis, disseminated phaeohyphomycosis and mycetoma, while morphologically similar fungi are rather commonly isolated from the environment. Phenotypes are insufficient for correct species identification, and molecular data have revealed significant genetic variation within the complex of species currently identified as P. verrucosa or P. americana. Multilocus analysis of 118 strains revealed the existence of five reproductively isolated species apparently having different infectious potentials. Strains of the sexual morph Capronia semiimmersa cluster within P. americana. The newly defined taxa differ markedly in their predilection for the human host.
    Keywords: Chaetothyriales ; chromoblastomycosis ; phaeohyphomycosis ; Phialophora ; phylogeny ; taxonomy
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 4
    Publication Date: 2024-01-12
    Description: Mucormycosis usually presents as a progressive infection with significant angio-invasion. Mucormycosis due to Mucor irregularis (formerly Rhizomucor variabilis var. variabilis), however, is exceptional in causing chronic cutaneous infection in immunocompetent humans, ultimately leading to severe morbidity if left untreated. More than 90 % of the cases known to date were reported from Asia, mainly from China. The nearest neighbour of M. irregularis is the saprobic species M. hiemalis. The aim of this study was to evaluate the taxonomic position, epidemiology, and intra- and inter-species diversity of M. irregularis based on 21 strains (clinical n = 17) by multilocus analysis using ITS, LSU, RPB1 and RPB2 genes, compared to results of cluster analysis with amplified fragment length polymorphism (AFLP) data. By combining MLST and AFLP analyses, M. irregularis was found to be monophyletic with high bootstrap support, and consisted of five subgroups, which were not concordant in all partitions. It was thus confirmed that M. irregularis is a single species at 96.1\xe2\x80\x93100 % ITS similarity and low recombination rates between populations. Some geographic structuring was noted with some localised populations, which may be explained by limited air-dispersal. The natural habitat of the species is likely to be in soil and decomposing plant material.
    Keywords: Biodiversity ; chronic cutaneous infection ; epidemiology ; Mucor hiemalis ; Mucor irregularis ; Mucormycosis ; taxonomy
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 5
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    In:  Other Sources
    Publication Date: 2018-06-08
    Description: Talks about how spaceborne scatterometers are the only proven mean to measure ocean surface wind vector.
    Keywords: Geophysics
    Type: American Geophysical Union Fall Meeting; San Francisco, CA; United States
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  • 6
    Publication Date: 2018-06-08
    Description: There has been a question on whether it is possible to measure the surface wind speeds of tropical cyclones with a spaceborne Ku-band scatterometer.
    Keywords: Geophysics
    Type: Journal of Geophysical Research-Ocean
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  • 7
    Publication Date: 2018-06-08
    Description: We compare here the air-sea exchange coefficient for C02 estimated with monthly mean wind speed measured by the Special Sensing Microwave Imager (SSM/I), Ks , and by the scatterometer QuikSCAT, Kq, for the year 2000.
    Keywords: Geophysics
    Type: Geophysical Research Letters
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  • 8
    Publication Date: 2018-06-08
    Description: Wind taken from the National Aeronautics and Space Administration (NASA) scatterometer (NSCAT) is compared with the operational analysis from European Center for Medium-Range Forecast (ECMWF) for the entire duration (about 9 months) of the NSCAT mission.
    Keywords: Geophysics
    Type: Geophysical Research Letters
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  • 9
    Publication Date: 2018-06-08
    Keywords: Geophysics
    Type: Western Pacific Geophysics Meeting; Taipei, Taiwan; Republic of China
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  • 10
    Publication Date: 2018-06-08
    Description: Sea surface height anomaly signals from satellite altimeter data are used to estimate heat storage. Since variability in sea surface height is mostly due to expansion and contraction of the water column it can be correlated with variations in the heat and salt content.
    Keywords: Geophysics
    Type: Geophysical Research Letters
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