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  • 1
    ISSN: 0947-6539
    Keywords: duplex ; gel mobility ; nucleic acids ; oligonucleotides ; strand displacement ; Chemistry ; General Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Hexitol nucleic acids (HNAs) with four natural bases form stable and sequence-selective duplexes with RNA. This was investigated by Tm determinations and gel shift experiments. The CD spectra of an HNA-RNA duplex show similarities with the CD spectra of the A-form of dsRNA. Single-stranded HNAs are able to induce strand displacement in a double-stranded RNA sequence. An HNA-RNA duplex is a poor substrate for RNase H, and can inhibit the RNase H-mediated cleavage of a natural DNA-RNA substrate. The HNA-RNA hybrid enhances the activity of HIV reverse transcriptase.
    Additional Material: 7 Ill.
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  • 2
    ISSN: 0947-6539
    Keywords: antisense systems ; DNA recognition ; nucleic acids ; oligonucleotides ; RNA ; Chemistry ; General Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Oligonucleotides constructed of 1′, 5′-anhydrohexitol nucleoside building blocks (hexitol nucleic acids, HNA) are completely stable towards 3′-exonuclease and form very stable self-complementary duplexes as well as sequence-selective stable duplexes with the natural DNA and RNA. Triple-helix formation has also been observed. These hybridisation characteristics are highly dependent on the base sequence and the experimental conditions. When using a phosphate buffer containing 0.1M NaCl, a homopurine HNA dodecamer gives a δTm of +3.0 °C/ base pair with RNA as complement. These oligomers may therefore be of considerable interest as antisense constructs.
    Additional Material: 11 Ill.
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  • 3
    Electronic Resource
    Electronic Resource
    New York : Wiley-Blackwell
    Die Makromolekulare Chemie 185 (1984), S. 687-695 
    ISSN: 0025-116X
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Polymer-linked 9-(2-hydroxyethoxymethyl)guanine (1) (acycloguanosine, acyclovir®) was prepared. Condensation of 1 with succinic anhydride gave in 77% yield 2-(9-guanylmethoxy)-ethyl hydrogen succinate (2), which was coupled through its carboxylic group either to poly(L-lysine) (M̄r = 55000) or to N-(6-aminohexyl)carbamoylmethylated dextran T80 to yield the polymers 3 and 4 (ligand concentrations in 3: 30 - 48 μmol of 2/g, in 4: 100 - 171 μmol of 2/g). From both polymers the antiviral 1 could be released by controlled saponification; the rate of drug delivery was found to be a function of pH and temperature. The polymeric carrier system 3 was degraded by endo-dextranase, and the carrier system 4 by trypsin, yielding low-molecular-weight derivatives of the pharmacon.
    Additional Material: 3 Ill.
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  • 4
    ISSN: 0947-3440
    Keywords: 7-Nitro-7-deaza-2′ -deoxyadenosine ; 8-Methyl-7-deaza-2′ -deoxyguanosine ; Conformation analysis ; X-ray scattering ; NMR spectroscopy ; Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The crystal structures of 7-nitro-7-deaza-2′ -deoxyadenosine (3) and 8-methyl-7-deaza-2′ -deoxyguanosine (5) have been determined and were compared with those of the parent 7-deaza-2′ -deoxyadenosine (2) and other 7-substituted 7-deazapurine 2′ -deoxynucleosides 4 and 6. The sugar pucker of compound 3 is N (3′T2′) whereas compound 5 shows 2′E conformation (S-type). Despite the methyl group, compound 5 exhibits anti conformation about the N-glycosylic bond as in all other cases. The predominant conformations of 3 and 5 in aqueous solution, determined by 1H NMR spectroscopy, is consistent with those in the solid state.
    Additional Material: 8 Ill.
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  • 5
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    Helvetica Chimica Acta 68 (1985), S. 534-544 
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Spontaneous Opening of the Pyrimidine Ring of Pyrrolo[2,3-d]pyrimidines after Intramolecular AcylationPhase-transfer alkylation of 4-methoxy-2-methylthio-7H-pyrrolo[2,3-d]pyrimidine (2) with ethyl 3-bromopropionate leads regioselectively to the ester 3a. After displacement of its methylthio group and saponification of the ester function, the acid 3e is obtained which can be transferred to the functionalized deazahypoxanthine 3f by either treatment with dry HBr/glacial AcOH or by nucleophilic displacement of the 4-methoxide. Reaction of 3f with a H2O-soluble carbodiimide results in an intramolecular acylation at N(1) by the activated ester; the intermediate 4 undergoes spontaneous hydroxylation and subsequent opening of the pyrimidine ring under formation of the pyrrolo[1,2-a]pyrimidine derivative 6. Its structure was proved by X-ray analysis. Subsequent deformylation of 6 in alkaline medium leads to the compound 7 in almost quantitative yield.
    Additional Material: 2 Ill.
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  • 6
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Solid-liquid phase-transfer glycosylation (KOH, tris[2-(2-methoxyethoxy)ethye]amine ( = TDA-1), MeCN) of pyrrolo[2,3-d]pyrimidines such as 3a and 3b with an equimolar amount of 5-O-[(1,1 -dimethylethyl)dimethylsilyl]-2,3-O-(1-methylethylidene)-α-D-ribofuranosyl chloride (1) [6] gave the protected β-D-nucleosides 4a and 4b, respectively, stereoselectively (Scheme). The β-D-anomer 2 [6] yielded the corresponding α-D-nucleosides 5a and 5b with traces of the β-D-compounds. The 6-substituted 7-deazapurine nucleosides 6a, 7a, and 8 were converted into tubercidin (10) or its α-D-anomer (11). Spin-lattice relaxation measurements of anomeric ribonucleosides revealed that T1 values of H—C(8) in the α-D-series are significantly increased compared to H—C(8) in the β-D-series while the opposite is true for T1 of H—C(1′). 15N-NMR data of 6-substituted 7-deazapurine D-ribofuranosides were assigned and compared with those of 2′-deoxy compounds. Furthermore, it was shown that 7-deaza-2′deoxyadenosine ( = 2′-deoxytubercidin; 12) is protonated at N(1), whereas the protonation site of 7-deaza-2′-deoxyguanosine (20) is N(3).
    Additional Material: 4 Ill.
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  • 7
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An efficient synthesis of the unknown 2′-deoxy-D-threo-tubercidin (1b) and 2′, 3′-dideoxy-3′-fluorotubercidin (2) as well as of the related nucleosides 9a, b and 10b is described. Reaction of 4-chloro-7-(2-deoxy-β-D-erythro-pentofuranosyl)-7H-pyrrolo[2,3-d]pyrimidine (5) with (tert-butyl)diphenylsilyl chloride yielded 6 which gave the 3′-keto nucleoside 7 upon oxidation at C(3′). Stereoselective NaBH4 reduction (→8) followed by deprotection with Bu4NF(→9a)and nucleophilic displacement at C(6) afforded 1b as well as 7-deaza-2′-deoxy-D-threo-inosine (9b). Mesylation of 4-chloro-7-{2-deoxy-5-O-[(tert-butyl)diphenylsilyl]-β-D-threo-pentofuranosyl}-7H-pyrrolo[2,3-d]-pyrimidine (8), treatment with Bu4NF (→12a) and 4-halogene displacement gave 2′, 3′-didehydro-2′, 3′-dideoxy-tubercidin (3) as well as 2′, 3′-didehydro-2′, 3′-dideoxy-7-deazainosne (12c). On the other hand, 2′, 3′-dideoxy-3′-fluorotubercidin (2) resulted from 8 by treatment with diethylamino sulfurtrifluoride (→10a), subsequent 5′-de-protection with Bu4NF (→10b), and Cl/NH2 displacement. 1H-NOE difference spectroscopy in combination with force-field calculations on the sugar-modified tubercidin derivatives 1b, 2, and 3 revealed a transition of the sugar puckering from the 3′T2′ conformation for 1b via a planar furanose ring for 3 to the usual 2′T3′ conformation for 2.
    Additional Material: 5 Tab.
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  • 8
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    Helvetica Chimica Acta 81 (1998), S. 1139-1155 
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The synthesis of 8-azaadenosine (1a; z8A) has been performed by SnCl4-catalyzed glycosylation of 8-azaadenine (4) with 1,2,3,5-tetra-O-acetyl-β-D-ribofuranose (5), followed by the separation of the regioisomers 6 and 7 and subsequent deacetylation. The ribonucleoside 1a as well as its 2′-deoxy derivative 1b (z8Ad) were converted into oligonucleotide building blocks-the phosphonate 2 as well as the phosphoramidites 3 and 19. They were used to prepare the oligoribonucleotide (z8A-U)6 and oligodeoxyribonucleotides. The Tm values and the thermodynamic data of duplex formation of the modified duplexes showed no significant changes compared to those containing Ad or A residues. This indicates that the stereoelectronic effect of the 8-azaadenine base which was found for the monomeric nucleoside has only a minor influence on the duplex stability.
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  • 9
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    Helvetica Chimica Acta 68 (1985), S. 2165-2172 
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Phase-transfer alkylation of 2,4-dimethoxy-7H-pyrrolo[2,3-d]pyrimidine (2) with ethyl 3-bromopropionate leads regioselectively to ethyl 2,3-dimethoxy-7H-pyrrolo[2,3-d]pyrimidine-7-propionate (3a). After saponification and ether cleavage, the functionalised 7-deazaxanthine 4b was obtained. Reaction of 4b with H2O-soluble carbodiimide resulted in an intramolecular acylation at N(3) with formation of the tricyclic compound 5. Compound 5 - bearing a reactive lactam ring - is an active-site-directed, irreversibly acting inhibitor of xanthine oxidase from cow's milk.
    Additional Material: 4 Ill.
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  • 10
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    Helvetica Chimica Acta 77 (1994), S. 883-896 
    ISSN: 0018-019X
    Keywords: Chemistry ; Organic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Solid-phase synthesis of the oligo(2′-deoxynucleotides) 19 and 20 containing 2′-deoxy-β-D-xylocytidine (4) is described. For this purpose, 1-(2-deoxy-β-D-threo-pentofuranosyl)cytosine ( = 1-(2-deoxy-β-D-xylofuranosyl)-cytosine; 4) was protected at its 4-NH2 group with a benzoyl (→ 5) or an isobutyryl (→8) residue, and a dimethoxytrityl group was introduced at 5′-OH (→ 7, 10; Scheme 2). Compounds 7 and 10 were converted into the 3′-phosphonates 11a,b. While 19 could be hybridized with 21 and 22 under formation of duplexes with a two-nucleotide overhang on both termini (19 · 21: Tm 29°; 19 · 22: Tm 22°), the decamer 20 bearing four xCd residues could no longer be hybridized with one of the opposite strands. Moreover, the oligonucleotides d[(xC)8—C] (13), d[(xC)4—C] (14), d[C—(xC)4—C] (15), and d[C—(xC)3—C] (16) were synthesized. While 13 exhibits an almost inverted CD spectrum compared to d(C9) (17), the other oligonucleotides show CD spectra typical for regular right-handed single helices. At pH 5, d[(xC)8—C] forms a stable hemi-protonated duplex which exhibits a Tm of 60° (d[(CH+)9] · d(C9): Tm 36°). The thermodynamic parameters of duplex formation of (13H+ · 13) and (17H+ · 17) were calculated from their melting profiles and were found to be identical in ΔH but differ in ΔS (13H+ · 13: ΔS = -287 cal/K mol; 17H+ · 17: ΔS = -172 cal/K mol).
    Additional Material: 5 Ill.
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