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  • 1
    Electronic Resource
    Electronic Resource
    New York : Wiley-Blackwell
    Biopolymers 48 (1998), S. 137-153 
    ISSN: 0006-3525
    Keywords: RNA ; pseudoknot ; Turnip Yellow Mosaic Virus ; Mouse Mammary Tumor Virus ; Beet Western Yellows Virus ; Simian Retrovirus type-1 ; Hepatitis Delta Virus ; translational frameshifting ; ribozyme ; nmr ; x-ray diffraction ; Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Recently, several high-resolution structures of RNA pseudoknots have become available. Here we review the progress in this area. The majority of the structures obtained belong to the classical or H-type pseudoknot family. The most complicated pseudoknot structure elucidated so far is the Hepatitis Delta Virus ribozyme, which forms a nested double pseudoknot. In particular, the structure-function relationships of the H-type pseudoknots involved in translational frameshifting have received much attention. All molecules considered show interesting new structural motifs. © 1999 John Wiley & Sons, Inc. Biopoly 48: 137-153, 1998
    Additional Material: 13 Ill.
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  • 2
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    International Journal of Quantum Chemistry 19 (1981), S. 413-426 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The generalized branching diagram (GBD) spin representation is defined as the method of sequentially coupling together a number of subsystem spin eigenfunctions using the general rules of angular momentum coupling. It is shown that any GBD representation may also be obtained by Schmidt orthogonalizing a set of cannonical spin-paired (SP) functions, provided the SP basis is suitably ordered. The ordering procedure used is well suited to computer implementation. This is a generalization of results known in the literature for the Yamanouchi-Kotani and for the Serber spin representations.
    Additional Material: 4 Ill.
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  • 3
    ISSN: 0009-2940
    Keywords: Cavitand ; Electrochemistry ; Iron sulfur cluster ; Metalloprotein model ; Chemistry ; Inorganic Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: NMR and Mössbauer spectroscopy show that a novel tetrathiol ligand, based on the cavitand diphenylglycoluril, encapsulates a 4Fe-4S cluster and induces asymmetry in it. The cluster gives a weak electrochemical current response in DMF, with a half-wave potential for the 2-/3- reduction vs. Fc+/Fc of -1.7 V. Ba2+ ions are adsorbed, according to X-ray analysis of the SEM image of the electrode, and act as modulator and promoter of the electrochemical response. On the basis of cyclic voltammograms it is proposed that this adsorption creates electroactive sites, changing the type of diffusion controlling the mass transport to the electrode from radial to linear, and that it helps the negatively charged complex, which contains a dipole, to approach the negative electrode in an orientation favourable for electron exchange. This feature makes the complex an important model for ferredoxins, in spite of a difference in redox potential.
    Additional Material: 10 Ill.
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  • 4
    ISSN: 0030-493X
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Rearrangement and dissociation processes of solitary ethane-1,2-diol radical cations were investigated by ab initio MO calculations, executed at the SDCI/RHF/DZP level of theory, including Pople-type size-consistency corrections. In order to obtain an accurate description of the chemistry involved, part of the potential energy surface was investigated by using the multi-reference CI method and also by using the valence bond (VB) method followed by SDCI calculations using the natural orbitals of the VB wavefunction. The ethane-1,2-diol radical cation is metastable with respect to CH3OH2+ + HCO·; it has been shown recently that the isotopologue DOCH2CH2OD loses (exclusively) HCO· to produce CH2DOHD+, not the isotopomer CH3OD2+ expected from earlier mechanistic proposals. We have traced a low-energy pathway which explains the observed label distribution and which takes place at the experimentally derived energy level. First, ionized ethane-1,2-diol collapses to the one-electron bond species [HOCH2‥ + ·‥CH2OH]+· which subsequently rearranges to the hydrogen-bonded species CH2=O…HO(H)CH2+·. Next, transformation to the transient CH2=O…HCH2OH+· takes effect and this rearrangement can be viewed as the 1,2-hydrogen shift, CH2OH2+· → CH3OH+·, catalyzed by formaldehyde. Following this, charge transfer takes place from the methanol cation to the formaldehyde molecule which thus becomes charged; because it is now charged, the formaldehyde unit can rotate and donate a proton to the methanol molecule, after which dissociation follows. Our calculations and experimental results can be interpreted in terms of proton shifts rather than hydrogen shifts taking place in ion-molecule (proton-bound) complexes.
    Additional Material: 3 Ill.
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  • 5
    Electronic Resource
    Electronic Resource
    New York, NY : Wiley-Blackwell
    Rapid Communications in Mass Spectrometry 1 (1987), S. 61-63 
    ISSN: 0951-4198
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Physics
    Additional Material: 3 Ill.
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  • 6
    ISSN: 1434-193X
    Keywords: Calixarenes ; Chromophores ; Nonlinear optics ; Pre-organization ; Supramolecular chemistry ; Chemistry ; General Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A systematic investigation of the conceptofpre-organization of nonlinear optical (NLO) active chromophoric groups in calix[4]arene derivatives and the influence on the absolute second-order nonlinear optical coefficients is reported. Several calix[4]arenes were synthesized by modification of the electron-withdrawing groups at the upper rim of the aromatic and extension of the conjugated π system of the pre-organized chromophoric groups. Electrical field induced second harmonic generation (EFISH) experiments showed high μβ(0) values up to 1165·10-48 esu. Compared with the corresponding reference compounds, enhancements of the μβ(0) values varying up to 2.5 times per chromophore were observed which proves the benefit of pre-organization of NLO-active units in a multi-chromophoric system. Another important advantage is that the increase in NLO activity observed for these systems is not accompanied with a shift of the absorption band to longer wavelengths exceeding 20 nm. This makes these calix[4]arene derivatives promising building blocks for the development of stable, NLO-active materials that are suitable for frequency doubling.
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  • 7
    ISSN: 0030-493X
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: By combining results from a variety of mass spectrometric techniques (metastable ion, collisional activation, collision-induced dissociative ionization, neutralization-reionization spectrometry, 2H, 13C and 18O isotopic labelling and appearance energy measurements) and high-level ab initio molecular orbital calculations, the potential energy surface of the [CH5NO]+ · system has been explored. The calculations show that at least nine stable isomers exist. These include the conventional species [CH3ONH2]+ · and [HO—CH2—NH2]+ ·, the distonic ions [O—CH2—NH3]+ ·, [O—NH2—CH3]+ ·, [CH2—O(H)—NH2]+ ·, [HO—NH2—CH2]+ ·, and the ion-dipole complex CH2=NH2+ … OH·. Surprisingly the distonic ion [CH2—O—NH3]+ · was found not to be a stable species but to dissociate spontaneously to CH2=O + NH3+ ·. The most stable isomer is the hydrogen-bridged radical cation [H—C=O … H … NH3]+ · which is best viewed as an immonium cation interacting with the formyl dipole. The related species [CH2=O … H … NH2]+ ·, in which an ammonium radical cation interacts with the formaldehyde dipole is also a very stable ion. It is generated by loss of CO from ionized methyl carbamate, H2N—C(=O)—OCH3 and the proposed mechanism involves a 1,4-H shift followed by intramolecular ‘dictation’ and CO extrusion. The [CH2=O … H … NH2]+ · product ions fragment exothermically, but via a barrier, to NH4+ · HCO… and to H3N—C(H)=O+ · H·. Metastable ions [CH3ONH2]+… dissociate, via a large barrier, to CH2=O + NH3+ + and to [CH2NH2]+ + OH· but not to CH2=O+ · + NH3. The former reaction proceeds via a 1,3-H shift after which dissociation takes place immediately. Loss of OH· proceeds formally via a 1,2-CH3 shift to produce excited [O—NH2—CH3]+ ·, which rearranges to excited [HO—NH2—CH2]+ · via a 1,3-H shift after which dissociation follows.
    Additional Material: 10 Ill.
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  • 8
    ISSN: 0030-493X
    Keywords: Chemistry ; Analytical Chemistry and Spectroscopy
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Part of the C3H5O2+ potential energy surfae was investiated by ab initio MO calculations executed at the MP3/6-31G*//4-31G + ZPVE and MP3/6-31G*//MP2/6-31G* + ZPVE levels of theory and by mass spectrometric experiments to ascetain whether carbonyl-protonated β-propiolactone ions , a, can interconvert with protonated acrylic acid, CH2=CHC(OH)2+, e, as claimed in a recent thermolysis study. Theory and experiment show that the lowest energy isomers are ions CH2=CHC(OH)2+, e, ΔHf = 385 kJ mol-1, , a, ΔHf = 408 kJ mol-1, , b, ΔHf = 424 kJ mol-1 and HOCH2CH2CH2CO+, f, ΔHf = 447 kJ mol-1. At the Hartree-Fock (HF) level of theory, the carboxyethylium ions CH2CH2COOH+, c, and CH3CHCOOH+, d, are minima lying much higher in energy (∼ 160 kJ mol-1 above e). Loss of I· from CH3CH(I)COOH produces ion d (or a structure akin to it) which displays characteristic collisional activation (CA) and neutralization-reionization (NR) spectra. Loss of I· from ICH2CH2COOH is proposed toyield ions a (via anchimeric assistance) rather than c. Metastable ions a, b, c, d and f freely interconvert, but ions e do not communicate with these ions. It is concluded that the observed equilibrium a ⇌ e in solution is due to an intermolecular process. Contrary to earlier suggestions, ions a do not undergo cycloreversion to HOCO+ + C2H4 and to CH2=COH+ + CH2O, but rather they spontaneously dissociate CH3CHOH+ + CO, CH3CO+ + CH2O, CH2=CHCO+ + H2O and CH3CH2+ + CO2. The product ions of these dissociation were characterized by double collision experiments andmechanisms for their formation are proposed. In this context, the dissociation behaviour of the following isomers was also examined: [CH2O…H…CH2CO]+, g, [CH2O…H…OCCH2]+, h, CH3CH(OH)CO+, i, , j, CH3C(=O)OCH2+, k, and CH3CH2OCO+, l. NR spectra indicate that the radicals d and e are stable species, paalleling, in part, results from ESR Spectroscopy. Analysis of appropriate isodesmic reactions indicates that the α-COOH group in ion d behaves as a hyudrogen atom and therefore this group cannot be said to destabilize the adjacet positive charge. This provides a rationalization for the observation that in solution α-carbonyl cations can be formed at rates comparable to the unsubstituted analogues. On inclusion of electron correlation in the geometry optimization, the structure of ion d is transformed into that of a 2-methyl-1-hydroxiratranyl cation, d1. The asymmetry in the O—C bond lengths in the oxiranyl ring reflects a trade-off between conjugative stabilization and ring strain energy. Ion c is found to adopt a bridged structure, c1, with a geometry strikingly similar to that of the bridged ethyl cation. Ions c1 and d1 have similar relative energies (148 and 135 kJ mol- above e) and are interconnected bya very low-lying transition state and hence they may freely interconvert. The appearance energy for loss of I· from CH3CH(I)COOH leads to (a) product(s) ΔHf of 145 kJ mol-1 and may therefore correspond to a mixture of ions c1, and d1.
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  • 9
    ISSN: 0263-6484
    Keywords: Intestine ; epithelial cells ; rat ; electron microscopy ; O-deethylation ; glucuronidation ; 7-ethoxycoumarin ; 1-naphthol ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: Rat intestinal epithelial cells were isolated by EDTA-chelation, combined with gentle shaking (modified Weiser procedure) or with strong longitudinal vibration (Harrison/Webster procedure). Both methods yield large numbers of viable cells and are relatively easy to use. Electronmicroscopical and biochemical data indicate that cell fractions from different levels of the villous region can be obtained only by the modified Weiser procedure. When strong mechanical forces are involved (Harrison-Webster procedure) the villus epithelium is released according to an all-or-nothing process. The biotransformational capacity of cell fractions, obtained from different levels of the villi by the modified Weiser procedure, was investigated. It was shown that the rate of metabolism of 7-ethoxycoumarin and 1-naphthol was substantially higher in lower villous cells than in cells isolated from the upper villous region. O-Deethylation of 7-ethoxycoumarin decreases from 145 ± 13 pmole/min mg cell protein (72 ± 4% conjugated) in lower villous cells to 62 ± 12 pmole/min mg cell protein (37 ± 6% conjugated) in tip cells. Glucuronidation of 1-naphthol decreased from 495 ± 23 pmole/min mg cell protein (lower villous cells) to 137 ± 13 pmole/min mg cell protein (tip cells).
    Additional Material: 6 Ill.
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  • 10
    ISSN: 0263-6484
    Keywords: Intestine ; isolated epithelial cells ; rat ; enzymic ; vibration ; 3-methylcholanthrene ; O-deethylation ; conjugation ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Medicine
    Notes: Two cell isolation procedures, i.e. a scraping/collagenase-treatment and a new vibration procedure in EDTA containing medium, were used to isolate intestinal epithelial cells. In both cell populations the metabolism of 7-ethoxycoumarin and 7-hydroxycoumarin was studied. Moreover, the time course and extent of induction of both steps in the biotransformation were investigated after oral 3-methylcholanthrene pretreatment of the rats. Twenty four hours after 3-methylcholanthrene pretreatment (20 mg kg-1) monooxygenase activity was induced about 6-fold and 2.5-fold when studied with cells of the vibratory and enzymic procedures, respectively. Control 7-ethoxycoumarin deethylase activity and 7-hydroxycoumarin glucuronidation were about the same when comparing both methods for cell-isolation. The formation of glucuronides in cells (both methods) is significantly lowered by 3-MC pretreatment, while sulphation remains unaffected. Results indicate that using enzymic treatment of mucosal scrapings, cell-populations are obtained containing relatively more differentiated (tip) cells. A number of advantages of the new (vibration) method are: better recovery, viability and reproducibility.
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