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  • Data  (4)
  • 2010-2014  (4)
  • 2000-2004
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  • 1
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    Unknown
    PANGAEA
    In:  Supplement to: Hüning, Anne K; Melzner, Frank; Thomsen, Jörn; Gutowska, Magdalena A; Krämer, Lars; Frickenhaus, Stephan; Rosenstiel, Philip; Pörtner, Hans-Otto; Philipp, Eva E R; Lucassen, Magnus (2013): Impacts of seawater acidification on mantle gene expression patterns of the Baltic Sea blue mussel: implications for shell formation and energy metabolism. Marine Biology, 160(8), 1845-1861, https://doi.org/10.1007/s00227-012-1930-9
    Publication Date: 2023-05-12
    Description: Marine organisms have to cope with increasing CO2 partial pressures and decreasing pH in the oceans. We elucidated the impacts of an 8-week acclimation period to four seawater pCO2 treatments (39, 113, 243 and 405 Pa/385, 1,120, 2,400 and 4,000 µatm) on mantle gene expression patterns in the blue mussel Mytilus edulis from the Baltic Sea. Based on the M. edulis mantle tissue transcriptome, the expression of several genes involved in metabolism, calcification and stress responses was assessed in the outer (marginal and pallial zone) and the inner mantle tissues (central zone) using quantitative real-time PCR. The expression of genes involved in energy and protein metabolism (F-ATPase, hexokinase and elongation factor alpha) was strongly affected by acclimation to moderately elevated CO2 partial pressures. Expression of a chitinase, potentially important for the calcification process, was strongly depressed (maximum ninefold), correlating with a linear decrease in shell growth observed in the experimental animals. Interestingly, shell matrix protein candidate genes were less affected by CO2 in both tissues. A compensatory process toward enhanced shell protection is indicated by a massive increase in the expression of tyrosinase, a gene involved in periostracum formation (maximum 220-fold). Using correlation matrices and a force-directed layout network graph, we were able to uncover possible underlying regulatory networks and the connections between different pathways, thereby providing a molecular basis of observed changes in animal physiology in response to ocean acidification.
    Keywords: BIOACID; Biological Impacts of Ocean Acidification; Comment; File name; Uniform resource locator/link to file
    Type: Dataset
    Format: text/tab-separated-values, 12 data points
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  • 2
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    Unknown
    PANGAEA
    In:  Supplement to: Storch, Daniela; Menzel, Lena; Frickenhaus, Stephan; Pörtner, Hans-Otto (2014): Climate sensitivity across marine domains of life: limits to evolutionary adaptation shape species interactions. Global Change Biology, 20(10), 3059-3067, https://doi.org/10.1111/gcb.12645
    Publication Date: 2023-10-28
    Description: Organisms in all domains, Archaea, Bacteria, and Eukarya will respond to climate change with differential vulnerabilities resulting in shifts in species distribution, coexistence, and interactions. The identification of unifying principles of organism functioning across all domains would facilitate a cause and effect understanding of such changes and their implications for ecosystem shifts. For example, the functional specialization of all organisms in limited temperature ranges leads us to ask for unifying functional reasons. Organisms also specialize in either anoxic or various oxygen ranges, with animals and plants depending on high oxygen levels. Here, we identify thermal ranges, heat limits of growth, and critically low (hypoxic) oxygen concentrations as proxies of tolerance in a meta-analysis of data available for marine organisms, with special reference to domain-specific limits. For an explanation of the patterns and differences observed, we define and quantify a proxy for organismic complexity across species from all domains. Rising complexity causes heat (and hypoxia) tolerances to decrease from Archaea to Bacteria to uni- and then multicellular Eukarya. Within and across domains, taxon-specific tolerance limits likely reflect ultimate evolutionary limits of its species to acclimatization and adaptation. We hypothesize that rising taxon-specific complexities in structure and function constrain organisms to narrower environmental ranges. Low complexity as in Archaea and some Bacteria provide life options in extreme environments. In the warmest oceans, temperature maxima reach and will surpass the permanent limits to the existence of multicellular animals, plants and unicellular phytoplankter. Smaller, less complex unicellular Eukarya, Bacteria, and Archaea will thus benefit and predominate even more in a future, warmer, and hypoxic ocean.
    Keywords: Priority Programme 1158 Antarctic Research with Comparable Investigations in Arctic Sea Ice Areas; SPP1158
    Type: Dataset
    Format: application/zip, 421.2 kBytes
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  • 3
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    Unknown
    PANGAEA
    In:  Supplement to: Harms, Lars; Frickenhaus, Stephan; Schiffer, Melanie; Mark, Felix Christopher; Storch, Daniela; Held, Christoph; Pörtner, Hans-Otto; Lucassen, Magnus (2014): Gene expression profiling in gills of the great spider crab Hyas araneus in response to ocean acidification and warming. BMC Genomics, BMC Genomics, 15(1), 789, https://doi.org/10.1186/1471-2164-15-789
    Publication Date: 2023-09-28
    Description: Hypercapnia and elevated temperatures resulting from climate change may have adverse consequences for many marine organisms. While diverse physiological and ecological effects have been identified, changes in those molecular mechanisms, which shape the physiological phenotype of a species and limit its capacity to compensate, remain poorly understood. Here, we use global gene expression profiling through RNA-Sequencing to study the transcriptional responses to ocean acidification and warming in gills of the boreal spider crab Hyas araneus exposed medium-term (10 weeks) to intermediate (1,120 µatm) and high (1,960 µatm) PCO2 at different temperatures (5°C and 10°C). The analyses reveal shifts in steady state gene expression from control to intermediate and from intermediate to high CO2 exposures. At 5°C acid-base, energy metabolism and stress response related genes were upregulated at intermediate PCO2, whereas high PCO2 induced a relative reduction in expression to levels closer to controls. A similar pattern was found at elevated temperature (10°C). There was a strong coordination between acid-base, metabolic and stress-related processes. Hemolymph parameters at intermediate PCO2 indicate enhanced capacity in acid-base compensation potentially supported by upregulation of a V-ATPase. The likely enhanced energy demand might be met by the upregulation of the electron transport system (ETS), but may lead to increased oxidative stress reflected in upregulated antioxidant defense transcripts. These mechanisms were attenuated by high PCO2, possibly as a result of limited acid-base compensation and metabolic down-regulation. Our findings indicate a PCO2 dependent threshold beyond which compensation by acclimation fails progressively. They also indicate a limited ability of this stenoecious crustacean to compensate for the effects of ocean acidification with and without concomitant warming.
    Keywords: BIOACID; Biological Impacts of Ocean Acidification
    Type: Dataset
    Format: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet, 115.3 kBytes
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  • 4
    Publication Date: 2024-03-15
    Keywords: Accession number; Acid-base regulation; Alkalinity, total; Alkalinity, total, standard deviation; Animalia; Aragonite saturation state; Arctic; Arthropoda; Benthic animals; Benthos; Bicarbonate ion; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Category; Coast and continental shelf; Comment; Coulometric titration; Description; EXP; Experiment; False discovery rate; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Gene expression, fold change, relative; Gene expression (incl. proteomics); Gene Ontology term; Haemolymph, bicarbonate ion; Haemolymph, partial pressure of carbon dioxide; Haemolymph, pH; Hyas araneus; Laboratory experiment; OA-ICC; Ocean Acidification International Coordination Centre; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; pH, standard deviation; Polar; Potentiometric; Rank; Read length; Salinity; Salinity, standard deviation; Single species; Species; Spitsbergen; Temperature; Temperature, water; Temperature, water, standard deviation; Test set; Treatment
    Type: Dataset
    Format: text/tab-separated-values, 128871 data points
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